Genome3D Documentation
Released Genomes
Genome3D contains pre-computed analysis for ten model organisms.
Released model organisms:
- Homo sapiens (human) ( Genome3D | UniProt)
The human species. The two organisms below have been tightly connected with humans throughout the ages. - Escherichia coli ( Genome3D | UniProt)
Commonly referred to as E. coli, it is a Gram-negative bacterium and can be pathogenic causing food poisoning in humans. - Saccharomyces cerevisiae (baker's yeast) ( Genome3D | UniProt)
Also referred to as budding yeast or brewer's yeast, it is important for food production in baking and winemaking since ancient human history. - Mus musculus (mouse) ( Genome3D | UniProt)
Mus musculus (mouse) - Arabidopsis thaliana (mouse-ear cress) ( Genome3D | UniProt)
Arabidopsis thaliana (mouse-ear cress) - Drosophila melanogaster (fruit fly) ( Genome3D | UniProt)
Drosophila melanogaster (fruit fly) - Caenorhabditis elegans (nematode) ( Genome3D | UniProt)
Caenorhabditis elegans (nematode) - Plasmodium falciparum (malaria parasite) ( Genome3D | UniProt)
Plasmodium falciparum (malaria parasite) - Staphylococcus aureus ( Genome3D | UniProt)
Staphylococcus aureus - Schizosaccharomyces pombe (fission yeast) ( Genome3D | UniProt)
Schizosaccharomyces pombe (fission yeast)
The source sequences were selected from UniProtKB's 'complete' proteome sequence lists. The numbers of unique UniProt entries that each resource has annotated in each of these genomes can be found here. These genomes were chosen to cover a range of diverse model organisms, e.g. including a plant, yet also provide comparative organisms, e.g. two yeasts and both mouse/human. The initial three organisms targeted for analysis were naturally human and two organisms tightly linked to humans for centuries. After these are complete we will continue to expand, possibly to include e.g. Rice, Cow and Pig.
